Tools > Shotgun sequencing > NCBI SRA file format > Install SRA-tools
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Question: SRA toolkit - problem with instalation
Download and install Toolkit. Use the Start Here app on your storage drive to quickly download and install Toolkit. Using a file manager such as Finder or File Explorer, open your device and launch Start Here Win or Start Here Mac. On the Register page, enter your information and click Register. SRA toolkit contains important tools to manipulate SRA (Short Read Archive) file. The objective of this article is to show you, how to install SRA toolkit on Ubuntu/Linux system. Download the last version for your computer operating system from here Use the following command on Linux to download the file sratoolkit.2.4.1.
Conda install linux-64 v2.10.8; osx-64 v2.10.1; To install this package with conda run one of the following: conda install -c bioconda sra-tools conda install -c bioconda/label/cf201901 sra-tools. I'm trying to download the latest sra-toolkit from NCBI on a remote server running.'Debian GNU/. Sra-toolkit has no installation candidate Hi all, I tried to get the SRA-toolkit from the terminal in linux using sudo apt-get install sra. This will download the SRA file (in sra format) and then convert them to fastq file for you. If your SRA file is paired, you will still end up with a single fastq file, since, fastq-dump, by default writes them as interleaved file.To change this, you can provide -split-files argument. https://skyeymeister.weebly.com/bitcoin-public-key-to-private-key-generate.html.
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3.5 years ago by
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I want to use SRA toolkit on Ubuntu machine. I've found that I have to get the newest version and 'install' it from binary files (like here https://github.com/ncbi/sra-tools/wiki/HowTo:-Binary-Installation). Secret maryo chronicles download mac. I do all these steps. However, previously I install the older version from get-apt install etc. And now - there is still obsolete verision on my machine and there is still a bug. How can I remove the older version from my machine?
Thanksdentepre
Install Sra Toolkit Mac
ADD COMMENT • link • modified 3.5 years ago • written 3.5 years ago by dentepre • 0
Hi genomax2,
Download And Install Sra Toolkit Mac Iphone
Thanks for your answer. It works :)Problem solved.
Sra Toolkit Download Linux
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ADD REPLY • link written 3.5 years ago by dentepre • 0